species:   Cocin
pid:       PID1274
parent:    cci-milR-20
paralog:   
locus:     scaffold_23:129297-129349
matures:   ['UCUAUUUCAAUACUUCAUGCU', '']
srr:       SRR9972091
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972091.cram scaffold_23:129297-129349

4 out of bounds
18 alignments
18 proper strand
18 stranded perfect matches

*******************           ***********************
AUGAAGCAUGAAAUAGACUUUCAUCAUGAAAGUCUAUUUCAAUACUUCAUGCU
((((((..(((((((((((((((...)))))))))))))))...))))))...
--------------------------------UCUAUUUCAAUACUUCAUGCU l=21 a=6 c
----------------------------------------------------- l=0 a=0 c*
--------------------------------UCUAUUUCAAUACUUCAUGCU l=21 a=6 ma
----------------------------------------------------- l=0 a=0 ma*

-UGAAGCAUGAAAUAGACU---------------------------------- l=18 a=3 
-UGAAGCAUGAAAUAGACUU--------------------------------- l=19 a=4 
-UGAAGCAUGAAAUAGACUUU-------------------------------- l=20 a=1 
-UGAAGCAUGAAAUAGACUUUCAU----------------------------- l=23 a=4 
--------------------------------UCUAUUUCAAUACUUCAUGCU l=21 a=6 (c,ma)

mb-00110
ax-0011010
ku-01
ss-101111111000
fn-111
